PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 245aa    MW: 26707.7 Da    PI: 6.6021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028979genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W+ I++ ++ gR++k+c++rw + 
      Lus10028979 13 KGSWSPQEDAALIKLVQQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 58
                     799*****************************.***********985 PP

2Myb_DNA-binding54.62.6e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed l+v+a+ ++G++ W+tI+r ++ gRt++ +k++w++ 
      Lus10028979  67 PFTPAEDALIVRAHSLHGNK-WATISRLLP-GRTDNAIKNHWNST 109
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.01859IPR017930Myb domain
SuperFamilySSF466899.36E-3110106IPR009057Homeodomain-like
SMARTSM007173.9E-161261IPR001005SANT/Myb domain
PfamPF002491.4E-171358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-251466IPR009057Homeodomain-like
CDDcd001671.31E-151557No hitNo description
PROSITE profilePS5129425.83660114IPR017930Myb domain
SMARTSM007171.4E-1464112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2367113IPR009057Homeodomain-like
PfamPF002491.3E-1467109IPR001005SANT/Myb domain
CDDcd001672.07E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEPPSSFTAD RIKGSWSPQE DAALIKLVQQ HGPRNWSMIS SGIPGRSGKS CRLRWCNQLS  60
PDVQHRPFTP AEDALIVRAH SLHGNKWATI SRLLPGRTDN AIKNHWNSTL RRKRAARDDR  120
DFSPAEPVHS GSNLADSEGE SGSNKKLCLR HDDNDTGNGG EGEIITTLLT LSPPGAEEDV  180
TAADSGGKEK WLKAAAGIGE QESCLLEIMQ RMIAEEVRSY IDRLRAQDGL NLGSNPEPVG  240
HHDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-39121133104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090668.12e-90PREDICTED: transcriptional activator Myb-like
TrEMBLA0A067LKB33e-90A0A067LKB3_JATCU; MYB family protein
STRINGVIT_13s0067g01360.t012e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-54myb domain protein 73